Using principal eigenvectors of adjacency matrices with added diagonal weights to compose centrality measures and identify bowtie structures for a digraph

Principal eigenvectors of adjacency matrices are often adopted as measures of centrality for a graph or digraph. However, previous principal-eigenvector-like measures for a digraph usually consider only the strongly connected component whose adjacency submatrix has the largest eigenvalue. In this paper, for each and every strongly connected component in a digraph, we add weights to diagonal elements of its member nodes in the adjacency matrix such that the modified matrix will have the new unique largest eigenvalue and corresponding principal eigenvectors. Consequently, we use the new principal eigenvectors of the modified matrices, based on different strongly connected components, not only to compose centrality measures but also to identify bowtie structures for a digraph.     

桉树杂交种与其亲本的近红外光谱判别

研究桉树控制授粉后目标性状的基因作用方式是探索其基因重组规律的重要内容。常规的数量统计分析精度往往不高,而DNA分析的专业要求高,且费时费力。该研究利用近红外光谱(NIRs)研究不同基因型桉树杂交种、亲本及杂交种与亲本间近红外光谱信息的关系,探索NIRs用于桉树杂交种与其亲本判别的可行性和准确性。以控制授粉的桉树亲本及其杂交F1代材料为对象,每种基因型从各自田间试验分别选取10个单株,采集树冠中上部新鲜健康叶片。用手持式近红外仪Phazir Rx(1624)采集桉树杂交种与其亲本叶片的NIRs信息。每单株选10片完全生理成熟的健康叶片,避开叶脉扫描其正面光谱5次,以50条NIRs信息的均值代表单个叶片的NIRs信息,最终每个基因型获得10条NIRs信息。对原始NIRs采用二阶多项式S.G一阶导数预处理。预处理后的NIRs用于多元统计分析,首先对桉树杂交亲本和子代样本进行主成分分析(PCA),直观展示不同基因型的分类情况。然后运用簇类独立软模式(SIMCA)和偏最小二乘判别分析(PLS-DA)两种有监督的判别模式验证NIRs用于桉树杂交种与其亲本树种的分类判别效果。PCA结果显示,不同的亲本间、杂交种间及杂交种与亲本间样本的主因子得分可以清晰地将各基因型分开。SIMCA模式判别分析中,桉树杂交种样本到亲本PCA模型的样本距离显示,待判别样本能够形成单独的聚类,且能直观反映两者的遗传相似。PLS-DA判别结果显示,桉树杂交亲本的PLS模型能通过预测其杂交子代的响应变量将其与亲本准确分开。结果表明,桉树叶片的NIRs信息可以准确地反映桉树杂交子代遗传信息的传递规律,NIRs判别模型可以准确地将各种基因型予以区分。因此,NIRs信息不仅可用于桉树杂交种和纯种的定性判别,还可以分析桉树基因重组过程中加性遗传效应的大小,从而为桉树遗传基础分析及其育种改良研究提供理论支撑。     

A volatolomic approach using cerumen as biofluid to diagnose bovine intoxication by Stryphnodendron rotundifolium

An innovative volatolomic approach employs the detection of biomarkers present in cerumen (earwax) to identify cattle intoxication by Stryphnodendron rotundifolium Mart., Fabaceae (popularly known as barbatimão). S. rotundifolium is a poisonous plant with the toxic compound undefined and widely distributed throughout the Brazilian territory. Cerumen samples from cattle of two local Brazilian breeds (‘Curraleiro Pé-Duro’ and ‘Pantaneiro’) were collected during an experimental intoxication protocol and analyzed using headspace (HS)/GC–MS followed by multivariate analysis (genetic algorithm for a partial least squares, cluster analysis, and classification and regression trees). A total of 106 volatile organic metabolites were identified in the cerumen samples of bovines. The intoxication by S. rotundifolium influenced the cerumen volatolomic profile of the bovines throughout the intoxication protocol. In this way, it was possible to detect biomarkers for cattle intoxication. Among the biomarkers, 2-octyldecanol and 9-tetradecen-1-ol were able to discriminate all samples between intoxicated and nonintoxicated bovines. The cattle intoxication diagnosis by S. rotundifolium was accomplished by applying the cerumen analysis using HS/GC–MS, in an easy, accurate, and noninvasive way. Thus, the proposed bioanalytical chromatography protocol is a useful tool in veterinary applications to determine this kind of intoxication.     

卷积神经网络用于近红外光谱古筝面板木材分级

目前,我国乐器制作行业在古筝面板用木材等级的筛选上主要依赖于技师主观评判,但此法缺少科学理论的依据,效率低,客观性及出材率的提高等方面受到限制,无法满足乐器市场的大量需求。实现古筝面板用木材快速、智能化的分级工作是一个急需解决的课题。近红外光谱非常适用于测量含氢的有机物质。古筝面板木材主要化学成分的化学键均由含氢基团组成,不同等级板材的化学成分存在差异,这些差异反映在近红外光谱中,为判断木材等级提供了可能。同时卷积神经网络对非线性数据具有较强的特征提取能力,所以提出一种应用卷积神经网络模型对光谱数据进行分析的方法,进而判别木材的等级。应用了Savitzky Golay一阶、二阶微分两种预处理方法和核主成分分析、连续投影算法两种数据压缩方法,通过所设计的卷积神经网络模型以样本识别准确率和模型构建过程中的损失值作为判定指标选出最佳预处理和数据压缩方法。为了提高模型提取分析光谱数据的能力和避免过拟合现象,应用了多通道卷积核、批量归一化和early stopping策略,将通过两层卷积层提取的特征信息送入全连接层,从而充分提取剩余信息,通过Softmax函数获得板材的最终预测等级,从而确定了最终模型。最终Savitzky Golay一阶微分和核主成分分析为最佳数据处理方法,同时得出用于区分不同等级的古筝面板用木材的主要关键谱带,分别为1 163~1 243, 1 346~1 375和1 525~1 584 nm。将该模型应用于测试集样本,古筝面板用木材的等级识别准确率为95.5%。实验结果表明所提出的方法可以高效地处理光谱数据,有效识别区分不同等级的古筝面板用木材的关键特征,从而为广阔的乐器市场提供一定的技术支持。     

Incremental dynamic mode decomposition: A reduced-model learner operating at the low-data limit

The present work aims at proposing a new methodology for learning reduced models from a small amount of data. It is based on the fact that discrete models, or their transfer function counterparts, have a low rank and then they can be expressed very efficiently using few terms of a tensor decomposition. An efficient procedure is proposed as well as a way for extending it to nonlinear settings while keeping limited the impact of data noise. The proposed methodology is then validated by considering a nonlinear elastic problem and constructing the model relating tractions and displacements at the observation points.     

不等式约束条件下回归模型的参数估计及检验

本文研究了具有不等式约束条件的回归模型的参数估计，给出了检验的统计量和一个实例．     

环状连续强激光下光学薄膜的瞬温和热畸变

详细研究了非冷却光学薄膜元件在环形激光光束辐照下的瞬态温度分布和随后的热畸变，并且用泰曼干涉仪实际测量了连续波氧碘激光辐照各种非冷却光学元件的热畸变量并与理论计算相比较，分析结果表明理论和实验相一致。     

Recursive partition and amalgamation with the exponential family: Theory and applications

The theory of tree-growing (RECPAM approach) is developed for outcome variables which are distributed as the canonical exponential family. The general RECPAM approach (consisting of three steps: recursive partition, pruning and amalgamation), is reviewed. This is seen as constructing a partition with maximal information content about a parameter to be predicted, followed by simplification by the elimination of ‘negligible’ information. The measure of information is defined for an exponential family outcome as a deviance difference, and appropriate modifications of pruning and amalgamation rules are discussed. It is further shown how the proposed approach makes it possible to develop tree-growing for situations usually treated by generalized linear models (GLIM). In particular, Poisson and logistic regression can be tree-structured. Moreover, censored survival data can be treated, as in GLIM, by observing a formal equivalence of the likelihood under random censoring and an appropriate Poisson model. Three examples are given of application to Poisson, binary and censored survival data.     

A likelihood-based method for haplotype association studies of case-control data with genotyping uncertainty

This paper discusses the associations between traits and haplotypes based on Fl (fluorescent intensity) data sets. We consider a clustering algorithm based on mixtures of t distributions to obtain all possible genotypes of each individual (i.e. "GenoSpec-trum"). We then propose a likelihood-based approach that incorporates the genotyping uncertainty to assessing the associations between traits and haplotypes through a haplotype-based logistic regression model. Simulation studies show that our likelihood-based method can reduce the impact induced by genotyping errors.     

主成分分析在地区科技竞争力评测中的应用

近年来对于科技竞争力的研究在国内方兴未艾,其中对于科技竞争力的评测是众多学者研究的重点和热点,也是各级决策者最为关心、最为重要的课题之一。本文根据科技竞争力概念和内涵来确定评测指标体系的构成要素,建立了评测指标体系,并利用主成分分析方法对采集来的数据进行分析,得到最终的评测结果。